HEX is a protein docking software used for molecular superimposition of various macromolecules

GRAMM a program for protein docking

GeneDoc is a tool for visulaizing , editing and analysing multiple alignment of genes.

3-D dock is a docking software for dock protein-protein as well as protein ligand.

GNU Dock is a tool for docking nucleiotide sequence.

Lig Builder used to construct ligand molecules with the constraints of target molecules.

Spack tool for docking macro-molecules

X-Score, gives graphical and stastitical score for docked product.

AutoDock is a docking software commonly used for docking all kind of protein and ligand.