programs that find specific types of prokaryotic sequences
BPROM http://www.softberry.com/berry.phtml?topic=bprom
NNPP / Prokaryotic http://www.fruitfly.org/seq_tools/promoter.html
TRANSTERM http://www.tigr.org/software/transterm.html
programs that find prokaryotic genes
GLIMMER http://www.tigr.org/software/glimmer/
GeneMark http://opal.biology.gatech.edu/GeneMark/
EASYGENE http://www.cbs.dtu.dk/services/EasyGene/
FGENESB http://www.softberry.com/berry.phtml?topic=fgenesb
programs that find eukaryotic promoters
http://www.fruitfly.org/seq_tools/promoter.html
http://www.cbs.dtu.dk/services/promoter/
http://www.cbil.upenn.edu/tess/
http://bimas.dcrt.nih.gov/molbio/signal/
http://argon.cshl.org/genefinder/CPROMOTER/index.htm
http://cgsigma.cshl.org/CpG_promoter/
http://rulai.cshl.org/tools/FirstEF/
http://searchlauncher.bcm.tmc.edu/seq-search/gene-search.html
http://www.itba.mi.cnr.it/webgene/
programs that find other kinds of eukaryotic sequences
http://searchlauncher.bcm.tmc.edu/seq-search/gene-search.html
http://www.cbs.dtu.dk/services/NetPGene/
http://argon.cshl.org/tabaska/polyadq_form.html
http://www.fruitfly.org/seq_tools/splice.html
http://www.softberry.com/berry.phtml?topic=promoter&prg=POLYAH
http://bioinformatics.iastate.edu/cgi-bin/sp.cgi
http://www.ebi.ac.uk/~thanaraj/MZEF-SPC.html
http://l25.itba.mi.cnr.it/~webgene/wwwHC_polya.html
websites that find eukaryotic genes
http://searchlauncher.bcm.tmc.edu/seq-search/gene-search.html
http://www.softberry.com/berry.phtml?topic=gfind
http://genes.mit.edu/GENSCAN.html
http://www.cbs.dtu.dk/services/
http://www.fruitfly.org/seq_tools/genie.html
http://opal.biology.gatech.edu/GeneMark/eukhmm.cgi
http://arete.ibb.waw.pl/PL/html/gene_lang.html
http://www1.imim.es/geneid.html
http://www.itba.mi.cnr.it/webgene/