Main Database Page

 

 

Viruses

 

HCVDB

The hepatitis C virus database

HIV Drug Resistance Database

HIV mutations that confer resistance to anti-HIV drugs

T4-like genome database

Sequences of T4-like bacteriophages from various sources

VIDA

Homologous viral protein families database

 VIPER

Virus particle explorer: virus capsid structures

VirOligo

Virus-specific oligonucleotides for PCR and hybridization

 

 

Prokaryotes

 

BacMap

 Picture atlas of annotated bacterial genomes

MetaGrowth

Growth requirements of bacterial pathogens

PGTdb

Prokaryotic growth temperature database

 

 

Escherichia coli

 

ASAP

A systematic annotation package for community analysis of E.coli and related genomes

CyberCell database

A collection of data on E.Coli K.1.2 intented for mathematical modelling to stimule bacterial cell.l

coliBase

A database for E.coli, salmonella

Colibri

 E.coli genome at Institute Pasteur

EchoBASE

Post-genomic studies of E.coli

GenoBase

E.coli genome database at Nara Institute

 GenProtEC

 E.coli K12 genome and proteome database

 PEC

Profiling of E.coli chromosome

EcoCyc

 E.coli K12 genes, metabolic pathways, transporters and gene regulation

 RegulonDB

Transcriptional regulation and operon organization in E.coli

 

 

Bacillus subtilis

 

 BSORF

Bacillus subtilis genome database at kyoto

NRSub

Non-redundant Bacillus subtilis database at U.Lyon

 

 

Other bacteria

 

BioCyc

Pathway/genome databases for many bacteria

CampyDB

Database for Campylobacter genome analysis

ClostriDB

Finished and unfinished genomes of Clostridium spp.

 CIDB

Chlamydia Interactive database: gene expression data

CyanoBase

Cyanobacterial genomes

LeptoList

Leptospira interrogans genome

MolliGen

Genomic data on mollicutes

 PseudoCAP

Pseudomonas aeruginosa genome database

 RsGDB

Rhodobacter sphaeroides genome

 VirFact

Bacterial virulence factors and pathogenicity islands

Virulence Factors

Reference database for microbial virulence factors

 

 

Unicellular eukaryotes

 

ApiEST-DB

EST sequences from various Apicomplexan parasites

CryptoDB

Cryptosporidium parvum genome database

Diatom EST

Database ESTs from two diatom algae,Thalassiosira pseudonana and Phaeodactylum tricornutum

 DictyBase

Universal resource for Dictyostelium discoideum

GeneDB

Curated database for various Sanger-sequenced genomes

LumbriBASE

ESTs of the earthworm Lumbricus rubellus

PlasmoDB

Plasmodium genome database

TcruziDB

Trypanosoma cruzi genome database

ToxoDB

 Toxoplasma gondii genome database 

 

 

Fungi

 

AGD

Ashbya gossypii genome database

 CandidaDB

Candida albicans genome database

CYGD MIPS

Comprehensive yeast genome database

GeŽnolevures

A comparison of S.cerevisiae and 14 other yeast sp.

PROPHECY

Profiling of phenotypic characteristics in yeast

 SCMD

Saccharomyces cerevisiae morphological database

SCPD

Saccharomyces cerevisiae promotor database

TRIPLES

Transposon-insertion phenotypes, localization and expression in Saccharomyces

Yeast snoRNA Database

Yeast small nucleolar RNAs

 

 

 Invertebrates

 

RNAiDB

RNAi phenotypic analysis of  C.elegans genes

WILMA

C.elegans annotation database

WormBase

Data repository for C.elegans and C.briggsae: curated genome annotation, genetics, physical map

 

 

 

 

Drosophila melanogaster

 

FlyBase

Drosophila sequence and genomic informations

 FlyBrain

Database of the Drosophila nervous system

FlyMine

Integration of insect genomic and proteomic data

FlyTrap

Drosophila mutants created using GFP protein trap strategy

GadFly

Genome annotation database of Drosophila

 DPDB

Drosophila polymorphism database

 

 

Other invertebrates

 

AppaDB

A database on the nematode Pristionchus pacificus

BeetleBase

Genome database of the beetle Tribolium castaneum

 CnidBase

 Cnidarian evolution and gene expression database

Nematode.net

Parasitic nematode sequencing project

NEMBASE

Nematode sequence and functional data database

PPNEMA

Plant-parasitic nematode rRNAs

SilkDB

 Silkworm Bombyx mori ESTs, mutants, photographs.

SilkSatDb

A microsatellite database of the silkworm Bombyx mori

 

About Bioinformatics

The Biological Databases seeks to support research that enables investigators to manage and make use of biological data and information for the discovery of new knowledge and the advancement of the field of biology. This supports and help in a range of activities along a continuum, from the formative, theoretical development of new algorithms, data structures and tools specific to the management of biological information, through the development of new information resources to the enhancement of established resources needed by whole communities of biological researchers.There are many databases to help biologist which are..........

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