FGENEH from the Baylor College of Medicine predicts a single complete gene and the corresponding amino acid sequence.

GENSCAN, available from MIT, predicts complete gene structures in genomic sequences.

IDT's Biotools provides freely usable Internet access to software for oligonucleotide design for the PCR, secondary structure prediction, sequence similarity,

MSEQ is a user-friendly program which combines novel graphics and integration of predictive parameters from several sources for the prediction and display of protein secondary structures

MZEF, from CSHL, is a program that predicts internal protein coding exons in genomic DNA sequences.

NAB was designed to construct models of helical and non-helical nucleic acids from a few dozen to a few hundred nucleotides in size.

NAMOT(Nucleic Acid MOdeling Tool) is a tool developed at Los Alamos National Laboratory for the structural manipulation of single or double stranded, RNA or DNA. NAMOT uses a set of reduced co-ordinates to describe base/unit, sugar and phosphate geometry

Peptool is a software program which assists in the identification of protein function

PoPMuSiC, has been developed to predict protein stability changes upon single-site mutations

PROSPECT Pro is the latest release of the R&D 100 award-winning protein structure prediction tool

RAPTOR is an innovative software tool designed to predict protein structures from their sequence information.

SegMod provides the user with a completely automated method for homology modeling

SIGNALSCAN, a service from the NIH, finds homologies in published signal sequences based on the sequence submitted

SOPMA (Self Optimized Prediction Method from Alignment) is a package to make secondary structure predictions of proteins

3D-PSSM is a Browser-based protein fold recognition program which uses 1D and 3D sequence profiles coupled with secondary structure information (Foldfit)

WHAT IF is an extensive protein modeling, protein structure analysis, database handler, molecular graphics package