Metabolic engineering of Pseudomonas taiwanensis VLB120 for rhamnolipid biosynthesis from biomass-derived aromatics

Metabolic Engineering Communications,15, art. no.e00202

HMGB3 inhibition by miR-142-3p/sh-RNA modulates autophagy and induces apoptosis via ROS accumulation and mitochondrial dysfunction and reduces the tumorigenic potential of...

Life Sciences, 2022, 304, 120727

Structure of an iminosugar complex of a glycoside hydrolase family 5 lichenase provides insights into the active site.

Biochimie Elsevier.​​

Ab-CoV: a curated database for binding affinity and neutralization profiles of coronavirus-related antibodies

Oxford University Press​​

Flexible Target Recognition of the Intrinsically Disordered DNA-Binding Domain of CytR Monitored by Single-Molecule Fluorescence Spectroscopy

J. Phys. Chem. B 2022, 126, 33, 6136–6147

Numerical Investigation on Low Salinity Augmented Microbial Flooding (LSAMF) Within a Sandstone Core for Enhanced Oil Recovery Under Nonisothermal and pH Gradient Conditions

Society for Petroleum Engineering 27(04): 2352-2389

Perturbation analysis in the N-terminal domain of hPGK1: a biophysical, structural and statistical mechanical study

Protein folding, Structural Perturbation, Disease

A Rational Approach to Design Bioreactors for Large-Scale Plant Cell Cultivations

15th International Conference on Gas-Liquid & Gas-Liquid-Solid Reactor Engineering GLS 2022 AIChE​​

Renalase: a novel regulator of cardiometabolic and renal diseases

Hypertension Research Nature Publishing Group​​

Chemistry Inspired Molecular Representation for Property Prediction

Association for Computing Machinery New York, NY, United States​​

Droplet Microfluidics-Based Fabrication of Monodisperse Poly (ethylene glycol)-Fibrinogen Breast Cancer Microspheres for Automated Drug Screening Applications

ACS Biomaterials Science & Engineering American Chemical Society​​

Substrate selectivity and kinetic studies of (S)-specific alcohol dehydrogenase purified from Candida parapsilosis ATCC 7330

Biocatalysis and Agricultural Biotechnology 43, 102410

A common Matrix metalloproteinase 8 promoter haplotype enhances the risk for hypertension via diminished interactions with nuclear factor kappa B

Journal of Hypertension LWW​​

Discovering adaptation-capable biological network structures using control-theoretic approaches

PLoS Computational Biology 18(1):e1009769

Novel Ratio-Metric Features Enable the Identification of New Driver Genes across Cancer Types

Scientific Reports 12(1):5

Process optimization for the rapid conversion of calcite into hydroxyapatite microspheres for chromatographic applications

Scientific Reports, 12 (1), art. no. 12164,.

Dampening of cross-correlations in beta strand of tip-ink protein with aging induces hearing loss

WILEY

Metabolic Modeling of the International Space Station Microbiome Reveals Key Microbial Interactions

Microbiome 10(1):102

Effect of Dormant Spare Capacity on the Attack Tolerance of Complex Networks

Physica A:Statistical Mechanics and its Applications 598:127419

Inactivation behavior and intracellular changes in Escherichia coli during electro-oxidation process using Ti/Sb–SnO2/PbO2 anode: Elucidation of the disinfection mechanism

Environmental Research, 210, art. no. 112749, Cited 2 times.

PCA-MutPred: Prediction of binding free energy change upon missense mutation in protein-carbohydrate complexes.

J. Mol. Biol. 434, 167526.​

Allosteric Communication in the Multifunctional and Redox NQO1 Protein Studied by Cavity-Making Mutations

Journals Antioxidants Volume 11 Issue 6 10.3390/antiox11061110

An Aggregated Dynamic Model of an Electronically Actuated ICE Powertrain

IEEE Access IEEE​​

Lattice model on the rate of DNA hybridization

Phys. Rev. E 105, 064410 – Published 21 June 2022

Production of cancer tissue-engineered microspheres for high-throughput screening

Cancer Research The American Association for CancerResearch​​

Molecular dynamics simulations of structure and dynamics in aqueous solution of neutral and ionized derivatives of poly(vinyl amine): methyl, n-propyl, and iso-propyl substitutions

J. Mol. Model., 28, 151, 2022.

Mutations in spike protein T cell epitopes of SARS-COV-2 variants: Plausible influence on vaccine efficacy

Elsevier​​

Key regulatory miRNAs in lipid homeostasis: implications for cardiometabolic diseases and development of novel therapeutics

Elsevier Current Trends​​

Prevalence of metabolic syndrome and its correlates in young PCOS women in South India

Bioscientifica​​

An End-to-End, Interactive Deep Learning Based Annotation System for Cursive and Print English Handwritten Text

ICDSMLA 2020 pp 567–583​

Modified iRNA agents

US​​

Ad interim recommendations for diagnosing SARS-CoV-2 infection by the IFCC SARS-CoV-2 Variants Working Group.

Clin. Chem. Lab. Med. 60:975-981.​​

A Multi-Scale Computational Model of Levodopa-Induced Toxicity in Parkinson's Disease

Frontiers Media S.A.​​

The Influence of Neural Activity and Neural Cytoarchitecture on Cerebrovascular Arborization: A Computational Model

Frontiers Media S.A.​​

Optimization by uniform design U8(83) approach for enhanced caffeine degradation in synthetic wastewater in bioreactor

Letters in Applied Microbiology 75, 308-316.

A selectivity filter mutation provides insights into gating regulation of a K+ channel

Communications Biology, 2022, 5(1), 345

Purification and characterisation of (S)-specific alcohol dehydrogenase from Candida parapsilosis ATCC 7330

Biochemical Engineering Journal 181, 108406.

Quantification of Entropic Excluded Volume Effects Driving Crowding-Induced Collapse and Folding of a Disordered Protein

J. Phys. Chem. Lett. 2022, 13, 13, 3112–3120

Effect of exogenous additives and stress inducers on xylitol production by Debaryomyces nepalensis in batch culture

Biofuel, Bioproducts and Biorefining 16, 986-998

Designing Biological Circuits: From Principles to Applications

Applications ACS Synthetic Biology 11(4):1377-1388

Living mortars-simulation study on organic lime mortar used in heritage structures

EPJ Plus.org

Co-aggregation and secondary nucleation in the life cycle of human prolactin/galanin functional amyloids

eLife 0:e73835 (2022).

Functional Gly297Ser Variant of the Physiological Dysglycemic Peptide Pancreastatin is a Novel Risk Factor for Cardiometabolic Disorders

Diabetes 71, 538–553 (2022)

A mechanistic review on plant-derived natural inhibitors of human coronaviruses with emphasis on SARS-COV-1 and SARS-COV-2

Curr. Drug. Targets, 23, 818-835 (2022)

Elucidating important structural features for the binding affinity of spike‐SARS‐CoV‐2 neutralizing antibody complexesl

John Wiley & Sons, Inc.​​

Approximate solutions to the response time problems of transcription autoregulatory gene networks

Journal of Mathematical Chemistry volume 60, pages586–604 (2022)​

Industrial Crops and Products

Volume 177, 114409.

Water Mapping and Scoring Approaches to Predict the Role of Hydration Sites in the Binding Affinity of PAK1 Inhibitors

Bentham Science Publishers CODEN​​

Mechanism of darunavir binding to monomeric HIV-1 protease a step forward in the rational design of dimerization inhibitors

Phys. Chem. Chem. Phys., 2022, 24, 7107-7120

Structural Transitions at the Water/Oil Interface by Ionic-Liquid-like Surfactant 1-Butyl-3-methylimidazolium Dioctyl Sulfosuccinate Measurements and Mechanism

J. Phys. Chem. B 2022

Tumor heterogeneity and molecular characteristics of glioblastoma revealed by single-cell RNA-seq data analysis

Genes. 13, 428.

Enantioselective Synthesis of 3-Amino-3’-carbazole Oxindole Derivatives via Friedel-Crafts Aminoalkylation Reaction

Chemistry Europe​​

miR-142-3p simultaneously targets HMGA1, HMGA2, HMGB1, and HMGB3 and inhibits tumorigenic properties and in-vivo metastatic potential of human cervical cancer cells

Life Sciences Volume 291, 15 February 2022, 120268

Structural–Energetic Basis for Coupling between Equilibrium Fluctuations and Phosphorylation in a Protein Native Ensemble

acscentsci.1c01548 American Chemical Society

Self Assembled Inhalable Immunomodulatory Silk Fibroin Nanocarriers for Enhanced Drug Loading and Intracellular Antibacterial Activity

Cite this: ACS Biomater. Sci. Eng. 2022, 8, 2, 708–721

Metabolic modeling of host–microbe interactions for therapeutics in colorectal cancer

Nature Partner Journals (NPJ): Systems Biology and Applications, 8 (2022)

Multi-Omic Data Helps Improve Prediction of Personalised Tumor Suppressors and Oncogenes

Frontiers in Genetics 13:854190

Continuous refolding of L-asparaginase inclusion bodies using periodic counter-current chromatography

Journal of Chromatography A,1662, art.no.462746, .

Bioinformatics and beyond

Bioinformatics (in press).

Effect of Charged Mutation on Aggregation of a Pentapeptide: Insights from Molecular Dynamics Simulations.

PROTEINS: Structure, Function and Bioinformatics 90(2):405-417​.

Investigations on the binding specificity of β-galactoside analogues with human galectin-1 using molecular dynamics simulations.

J Biomol Struct Dyn. 1-12.

Elucidating important structural features for the binding affinity of spike-SARS-CoV-2 neutralizing antibody complexes.

PROTEINS: Structure, Function and Bioinformatics. 90: 824-834..

Myxobacterial depsipeptide chondramides interrupt SARS-CoV-2 entry by targeting its broad, cell tropic spike protein.

J Biomol Struct Dyn. (in press).

ProNAB: Database for binding affinities of protein-nucleic acid complexes and their mutants.

Nucl. Acids Res.50(D1):D1528-D1534

Understanding disorder-to-order transitions in protein–RNA complexes using molecular dynamics simulations.

J Biomol Struct Dyn. 1-11.

A Multiscale, Systems-Level, Neuropharmacological Model of Cortico-Basal Ganglia System for Arm Reaching Under Normal, Parkinsonian, and Levodopa Medication Conditions

Frontiers Media S.A.​​

27-hydroxycholesterol, the estrogen receptor modulator alters DNA methylation in breast cancer

Frontiers in Endocrinology

Chromodomain protein interacts with H3K9me3 and controls RBC rosette formation by regulating the expression of a subset of RIFINs in the malaria parasite.

J Mol Biol, 2022 Apr 20, 434 (12); 167601.

Gain control by sparse, ultra-slow glycinergic synapses

Elsevier B.V.

Incremental Model Identification of Bio-processes from Data: Application to Microbial Production of Hyaluronic Acid

IFAC-PapersOnLine Elsevier​​

A Computational Framework to Identify Metabolic Engineering Strategies for the Co-Production of Metabolites

Frontiers in Bioengineering and Biotechnology 9:1330

A PKC that controls polyphosphate levels pinocytosis and exocytosis regulates stationary phase onset in Dictyostelium.

J Cell Sci (2022) 135 (9): jcs259289.

A probiotic based product using multi-strain Bacillus sp. and predictive models for shrimp growth following probioitic intervention

Aquaculture 551

Cellulose – A Sustainable Material for Biomedical Applications.

CRC Press

Functional regulation of an intrinsically disordered protein via a conformationally excited state

Cold Spring Harbor Laboratory

Human phospholipid scramblase 1-cholesterol interaction via CRAC motif is essential for functional regulation and subcellular localization

International Journal of Biological Macromolecules 290: 850-857

In-silico identification of Tyr232 in AMPKα2 as a dephosphorylation site for the protein tyrosine phosphatase PTP-PEST

Cold Spring Harbor Laboratory​​

Inflammation-induced PELP1 expression promotes tumorigenesis by activating GM-CSF paracrine secretion in the tumor microenvironment

American Society for Biochemistry and Molecular BiologyInc​

Modeling Reactive Species Metabolism in Colorectal Cancer for Identifying Metabolic Targets and Devising Therapeutics

bioRxiv Cold Spring Harbor Laboratory​​

Online measurement of dissolved oxygen in shake flask to elucidate its role on caffeine degradation by Pseudomonas sp.

Chemical Engineer 64, 162-170

p21 activated kinase-1 and tamoxifen – A deadly nexus impacting breast cancer outcomes

Elsevier B.V.CODEN BBACE.​​

Predicting and Simulating Mutational Effects on Protein Folding Kinetics

Protein Folding pp 373–386

Regulation and Functions of Membrane Lipids: Insights from Caenorhabditis elegans.

BBA Advances. 2, 10043

α-amylase and cellulase production by novel halotolerant Bacillus sp.PM06 isolated from sugarcane pressmud

Biotechnology and Applied Biochemistry 69, 149-159

. Influence of energy deficiency on the subcellular processes of Substantia Nigra Pars Compacta cell for understanding Parkinsonian neurodegeneration.

Sci Rep 11, 1754 (2021)

A Complex-valued Oscillatory Neural Network for Storage and Retrieval of Multidimensional Aperiodic Signals

Frontiers in Computational Neuroscience, 2021. doi: 10.3389/fncom.2021.551111[https://www.frontiersin.org/articles/10.3389/fncom.2021.551111]

A deep network-based model of hippocampal memory functions under normal and Alzheimer's disease conditions

bioRxiv (2021)[https://www.biorxiv.org/content/10.1101/2021.01.31.429076v1]

A Multiscale, Systems-level, Neuropharmacological Model of Cortico-Basal Ganglia System for Arm Reaching under Normal, Parkinsonian and Levodopa Medication Conditions

bioRxiv 2021.02.10.430544[https://www.biorxiv.org/content/10.1101/2021.02.10.430544v1]

A Network Architecture for Bidirectional Neurovascular Coupling in Rat Whisker Barrel Cortex.Frontiers in Computational Neuroscience

Biotechnology and Applied Biochemistry, Accepted. Impact factor: 1.64

a-amylase and cellulase production by novel halotolerant Bacillus sp.PM06 isolated from sugarcane pressmud.

Biotechnology and Applied Biochemistry, Accepted. Impact factor: 1.64

An evolutionarily-conserved promoter allele governs HMG-CoA reductase expression in spontaneously hypertensive rat

ANuPP: A versatile tool to predict aggregation nucleating regions in peptides and proteins-

J Mol Biol. 433, 166707.

Are Cysteine residues of human phospholipid scramblase 1 imperative in Pb2+ and Hg2+ binding induced phospholipids scrambling.

European Biophysics Journal, Impact factor: 2.527

Artificial Neurovascular Network (ANVN) to Study the Accuracy Vs. Efficiency trade-off in an Energy Dependent Neural Network

Cholesterol interaction attenuates scramblase activity of SCRM-1 in the artificial membrane.

BBA Biomembranes, Accepted, Impact factor: 3.4

Comparison of first trimester dating methods for gestational age estimation and their implication on preterm birth classification in a North Indian cohort. BMC Pregnancy and Childbirth 21: 343-

ScienceDirect

Computational studies of drug repurposing and synergism of lopinavir, oseltamivir and ritonavir binding with SARS-CoV-2 protease against COVID-19.

J Biomol Struct Dyn. 39, 2673-2678.

COVID-19 outbreak: history, mechanism, transmission, structural studies and therapeutics-

Infection. 49, 199�213

DBU and TMG based ILs enhanced thermal stability of xylose reductase at extreme pH through specific ion effect. Journal of Molecular Liquids, 328, 115394. .

Deciphering the role of residues involved in disorder-to-order transition regions in archaeal tRNA methyltransferase 5-

Genes 12, 399.

Exploring antibody repurposing for COVID-19: Beyond presumed roles of therapeutic antibodies.

Scientific Reports 11, 10220

Exploring common therapeutic targets for neurodegenerative disorders using transcriptome study.-

Front Genet. 12, 639160.

Hypoxia-mediated regulation of mitochondrial transcription factors in renal epithelial cells: implications for hypertensive renal physiology.

Hypertens Res 44:154-167

Identification of Transcription Factors, Biological Pathways, and Diseases as Mediated by N6-methyladenosine using Tensor Decomposition-Based Unsupervised Feature Extraction-

Appl Sci. 11, 213.

Menstrual phase does not influence ventilatory responses to group III,IV afferent signaling in eumenorrheic young females.

Respir Physiol Neurobiol. 2021 Jun 9 292:103712

Menstrual phase does not influence ventilatory responses to group III/IV afferent signaling in eumenorrheic young females.

Respir Physiol Neurobiol. 2021 Jun 9 292:103712.

Molecular dynamics simulations of cognate and non-cognate AspRS-tRNA Asp complexes.

J Biomol Str Dyn. 39, 493-501..

MPTherm-pred: Analysis and prediction of thermal stability changes upon mutations in transmembrane proteins.

J Mol Biol. 433, 166646.

MPTherm: Database for Membrane Protein Thermodynamics for understanding folding and stability.

Brief Bioinf. 22, 2119-2125.

Mutations in transmembrane proteins: diseases, evolutionary insights and prediction-

Brief. Bioinf. (in press)

Predicting potential residues associated with lung cancer using deep neural networks-

Mutation Res. 822, 111737

Protein Aggregation: In silico Algorithms and Applications

Biophys Rev. 13, 71-89.

ProThermDB: Thermodynamic database for proteins and mutants revisited after 15 years

Nucleic Acids Res. 49, D420-424.

Renal denervation and celiac ganglionectomy decrease mean arterial pressure similarly in genetically hypertensive Schlager (BPH/2J) mice.

Hypertension. 2021 Feb 77(2):519-528.

SIRT 6 transcriptionally regulates fatty acid transport by suppressing PPAR?

Cell Rep. 2021 Jun 135(9):109190

Small peptide inhibitor from the sequence of RUNX3 disrupts PAK1-RUNX3 interaction and abrogates its phosphorylation dependent oncogenic function.

. Oncogene (2021), Accepted � In Press-

Understanding disorder-to-order transitions in protein�RNA complexes using molecular dynamics simulations

J Biomol Struct Dyn. (in press)

Why are ACE2 binding coronavirus strains SARS-CoV/SARS-CoV-2 wild and NL63 mild-

Proteins: Struct Funct Bioinf. 89:389-398-

AggreRATE-Pred: A mathematical model for the prediction of change in aggregation rate upon point mutation

ScienceDirect

Design of fluorinated sialic acid analog inhibitor to H5 Hemagglutinin of H5N1 Influenza virus through Molecular Dynamics simulation study

ScienceDirect

MMolecular origins of folding rate differences in the thioredoxin family

ScienceDirect

A Change in Domain Cooperativity Drives the Function of Calnuc.

ScienceDirect

A Computational Model of Levodopa-Induced Toxicity in Substantia Nigra Pars Compacta in Parkinson's Disease

ScienceDirect

A Disordered Loop Mediates Heterogeneous Unfolding of an Ordered Protein by Altering the Native Ensemble

ScienceDirect

A Multi-Scale Computational Model of Excitotoxic Loss of Dopaminergic Cells in Parkinson's Disease

ScienceDirect

A Multi-Scale Computational Model of Excitotoxic Loss of Dopaminergic Cells in Parkinson’s Disease

ScienceDirect

A Multiparametric Fluorescence Probe to Understand the Physicochemical Properties of Small Unilamellar Lipid Vesicles in Poly(ethylene glycol)-Water medium Langmuir

ScienceDirect

Binding affinity of protein-protein complexes: experimental techniques, databases and computational methods. In “Protein interactions: computational methods, analysis and applications

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Biochemical characterization of an esterase from Clostridium acetobutylicum with novel GYSMG pentapeptide motif at the catalytic domain

ScienceDirect

Biofabrication Strategies and Engineered In Vitro Systems for Vascular Mechanobiology

ScienceDirect

Caffeine degradation in synthetic wastewater using silver ferrite nanoparticles fabricated via green route using Amaranthus blitum leaf extract

ScienceDirect

Computational approaches for identifying potential inhibitors on targeting protein interactions in drug discovery

ScienceDirect

Computational approaches for understanding the recognition mechanism of protein–nucleic acid complexes

ScienceDirect

Computational studies of drug repurposing and synergism of lopinavir, oseltamivir and ritonavir binding with SARS-CoV-2 protease against COVID-19

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Controlling Structure and Dimensions of a Disordered Protein via Mutations

ScienceDirect

Coronavirus and the Heat – Realistic Perspective Biotech Express 7(83) 20-26

ScienceDirect

Counteraction of osmolytes on pH induced unfolding of xylose reductase from Debaryomycesnepalensis

ScienceDirect

CPAD 2.0: A repository of curated experimental data on aggregating proteins and peptides

ScienceDirect

Curcumin augments therapeutic efficacy of TRAIL-based immunotoxins in leukemia Pharmacological Reports

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Defective cell proliferation is an attribute of overexpressed Notch1 Receptor and impaired autophagy in Fanconi Anemia Genomics

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Degradation of synthetic coffee wastewater using induced cells of Pseudomonas sp. NCIM 5235

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Design and evaluation of Konjac glucomannan-based bioactive interpenetrating network (IPN) scaffolds for engineering vascularized bone tissues

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Dynamics and Barrier of Movements of Sodium and Potassium Ions Across the Oxytricha nova G-Quadruplex Core

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Effective removal of Th4+, Pb2+, Cd2+, malachite green, methyl violet and methylene blue from their aqueous solution by amylopectin dialdehyde-Schiff base

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Electrostatic Frustration Shapes Folding Mechanistic Differences in Paralogous Bacterial Stress Response Proteins

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Electrostatics Plays a Crucial Role in HIV-1 Protease Substrate Binding, Drugs Fail to Take the Advantage

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Establishing the promising role of novel combination of triple therapeutics delivery using polymeric nanoparticles for Triple negative breast cancer therapy BioImpacts

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Evolutionary engineering of Lactobacillus bulgaricus reduces enzyme usage and enhances conversion of lignocellulosics to D-lactic acid by simultaneous saccharification and fermentation

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Fabrication of nanopatterned PLGA films of Curcumin and TPGS for skin cancer International Journal of Pharmaceutics

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Facile synthesis and nanoscale features of a nanostructured nordihydroguaiaretic acid analog for therapeutic applications

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Glycogen synthase kinase 3-beta inhibitor- CHIR 99021 augments the differentiation potential of Mesenchymal stem cells

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Guanine Nucleotide Binding Protein Like – 1 (GNL1) promotes cancer cell proliferation and survival through AKT/p21CIP1 signalling cascade

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Heavy metals mediated phospholipids scrambling by human phospholipid scramblase 3: a probable role in mitochondrial apoptosis

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Identification of potential inhibitors for targets involved in dengue fever

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Identifying suitable tools for variant detection and differential gene expression using RNA-seq data

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Immobilization of xylose reductase enzyme on cysteine- functionalized Murrayakoenigii mediated magnetite nanoparticles

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In vivo single-cell analysis using calcofluor – white staining detects high expression phenotype in L. lactis cultures engineered for hyaluronic acid production

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Influence of crucial reservoir properties and microbial kinetic parameters on enhanced oil recovery by microbial flooding under nonisothermal conditions: Mathematical modelling and numerical simulation

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Influence of Energy Deficiency on the Molecular Processes of Substantia Nigra Pars Compacta Cell for Understanding Parkinsonian Neurodegeneration - A Comprehensive Biophysical Computational Model

ScienceDirect

Insights into changes in binding affinity caused by disease mutations in protein-protein complexes

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Levels of Heterochiasmy During Arabidopsis Development as Reported by Fluorescent Tagged Lines.

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Low Intermittent Flow Promotes Rat Mesenchymal Stem Cell Differentiation in Logarithmic Fluid Shear Device Biomicrofluidics 14

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Meniscal Tissue Engineering via 3D Printed PLA monolith with carbohydrate based Self-Healing Interpenetrating Network Hydrogel

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Metal-Free Semi-Aromatic Polyester: A Novel Nanomaterial for Potential Clinical Application Journal of Drug Delivery Science and Technology 56

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MicroRNA-27a is a key modulator of cholesterol biosynthesis

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Modulation of acid-sensing ion channels by hydrogen sulfide.

ScienceDirect

Modulation of acid-sensing ion channels by hydrogen sulfide.

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Molecular association and gelling characteristics of curdlan

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Molecular Basis of Differential Stability and Temperature Sensitivity of ZIKA versus Dengue Virus Protein Shells

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Molecular cloning and biochemical characterization of the phospholipid scramblase SCRM-1 from Caenorhabditis elegans

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Molecular dynamics simulations of cognate and non-cognate AspRS-tRNA Asp complexes

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MPTherm-pred: Analysis and prediction of thermal stability changes upon mutations in transmembrane proteins

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MPTherm: Database for Membrane Protein Thermodynamics for understanding folding and stability

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N6-Adenosine methylation, a regulatory mark on mRNA is recognized by YTH domain protein in human malaria parasite falciparum.

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Neurodegenerative diseases -Is metabolic deficiency the root cause?

ScienceDirect

Neurodegenerative diseases – Is metabolic deficiency the root cause?

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New insights into the stereospecific reduction by an (S) specific carbonyl reductase from Candida parapsilosis ATCC 7330: Experimental and QM/MM studies

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Non-specific DNA-driven quinary interactions promote structural transitions in proteins

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Novel Dextrin‐Cysteine Schiff Base: A Highly Efficient Sensor for Mercury Ions in Aqueous Environment

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Numerical modeling on the influence of effective porosity, microbial kinetics and operational parameters on enhanced oil recovery by microbial flooding within sandstone formation

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Obesity-induced sympathoexcitation is associated with Nrf2 dysfunction in the rostral ventrolateral medulla

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Online measurement of dissolved oxygen in shake flask to elucidate its role on caffeine degradation

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Optimization of physical parameters pH and temperature for maximized activity and stability of Vibrio cholera L-asparaginase by statistical experimental design

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Organotypic Cancer Tissue Models for Drug Screening: 3D Constructs, Bioprinting and Microfluidic Chips Drug Discovery Today 25(5) 879-89

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Plant extract mediated synthesis enhanced the functional properties of silver ferrite nanoparticles over chemical synthesis.

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PLP-1 is essential for germ cell development and germline gene silencing in C. elegans

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Polystyrene adsorbents: Rapid and efficient surrogate to dialysis in membrane protein purification

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Potential of Terminalia arjuna as a promising phytoremedy against COVID19: DDPH Scavenging, Catalase Inhibition and Docking studies

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pPerturb: A Server for Predicting Long-Distance Energetic Couplings and Mutation-Induced Stability Changes in Proteins via Perturbations

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Pred-MutHTP: Prediction of disease-causing and neutral mutations in human transmembrane proteins

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Prediction of nucleic acid binding proteins and their binding sites. In “Protein interactions: computational methods, analysis and applications”

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ProAffiMuSeq: Sequence-based method to predict the binding free energy change of protein-protein complexes upon mutation using functional classification

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ProCaff: protein-carbohydrate complex binding affinity database

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Protein folding: how, why, and beyond

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Protein Interactions: computational methods, analysis and applications

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Protein-carbohydrate complexes: binding site analysis, prediction, binding affinity and molecular dynamics simulations

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Quantitative structure-activity relationship in ligand-based drug design: concepts and applications

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Repression of Type I Interferon pathway Underlies MYC- and KRAS-Dependent Evasion of NK and B cells in Pancreatic Ductal Adenocarcinoma

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Role of disordered regions in transferring tyrosine to its cognate tRNA

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SARS-CoV, MERS-CoV, and 019-nCoV viruses: An overview of origin, evolution, and genetic variations journal VirusDisease

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SET7/9 interacts and methylates the ribosomal protein, eL42 and regulates protein synthesis

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Simultaneous optimization of activity and stability of xylose reductase from D. nepalensis NCYC 3413 using statistical experimental design

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Slow Folding of a Helical Protein: Large Barriers, Strong Internal Friction, or a Shallow, Bumpy Landscape?

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Slow-paced breathing and autonomic function in people post-stroke

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Structural analysis and antioxidative properties of mutan (water-insoluble glucan) and caroboxymethylmutan from Streptococcus mutans

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Synthesis of a 1,2,3-bistriazole derivative of embelin and evaluation of its effect on high-fat diet fed-streptozotocin-induced type 2 diabetes in rats and molecular docking studies Bioorganic Chemistry

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Targeting leukemic stem cells using humanized chimeric immunotoxin Annals of Oncology 31

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The Influence of Matrix-Induced Dormancy on Metastatic Breast Cancer Chemoresistance

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Therapeutic targets and computational approaches on drug development for COVID-19. Curr Top Med Chem

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VEPAD- Predicting the effect of variants associated with Alzheimer’s disease using machine learning

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A priori parameter identifiability in models with non-rational functions-

Automatica

Amarogentin, a secoiridoid glycoside, activates AMP-activated protein kinase (AMPK) to exert beneficial vasculo-metabolic effects-

BBA - General Subjects

Forging new scaffolds from old: Combining Scaffold hopping and Hierarchical virtual screening for identifying novel Bcl-2 inhibitors-

Curr Top Med Chem

Investigation on the binding specificity of Agrocybe cylindracea galectin towards a(2,6)-linked sialyllactose by molecular modelling and molecular dynamics simulations-

J Carb Chem

Structural basis of flavonoids as dengue polymerase inhibitors: Insights from QSAR and docking studies-

J Biomol Struct Dyn

A binding cooperativity switch driven by synergistic structural swelling of an osmo-regulatory protein pair-

ScienceDirect

A brief note on genes that tigger components of apomixis-

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A common tag nucleotide variant in MMP7 promoter increases risk for hypertension via enhanced interactions with CREB (Cyclic AMP Response Element-Binding Protein) Transcription Factor. -

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A computational model of loss of dopaminergic cells in Parkinson-s disease due to glutamate-induced excitotoxicity. Frontiers in Neural Circuits.-

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A Cortico-Basal Ganglia Model for choosing an optimal rehabilitation strategy in Hemiparetic Stroke (Accepted in Scientific Reports on 12 Aug, 2019)

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A model of motion processing in the visual cortex using neural field with asymmetric Hebbian learning-, Frontiers in Neuroscience-Perception Science, 2019-

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A prospective compound screening contest identified broader inhibitors for Sirtuin 1-

Scientific Reports

Adapting Community Detection Algorithms for Disease Module Identification in Heterogeneous Biological Networks

ScienceDirect

Adapting community detection algorithms for disease module identification in heterogeneous biological networks

ScienceDirect

Amarogentin, a secoiridoid glycoside, activates AMP-activated kinase (AMPK) to exert beneficial vasculo-metabolic effects--

BBA-General Subjects-

Analysis of experimental conditions, measurement strategies, and model identification approaches on parameter estimation in plug flow reactors, Industrial and engineering chemistry research-

scienceDirect

Assessment of network module identification across complex diseases

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Biosynthesis of Hyaluronic acid polymer: Dissecting role of sub structural elements of hyaluronan synthase-

Scientific Reports , 9:12510

Bipolar oscillations between positive and negative mood states in a computational model of Basal Ganglia. Cognitive Neurodynamics, Springer, 17412556.-

ScienceDirect

BorodaTM: prediction of disease-associated mutations in membrane proteins with known 3D structure.-

PLoS ONE, 14(7):

Brain prostaglandin D2 Increases neurogenic pressor activity and mean arterial pressure in angiotensin II-salt hypertensive rats-

Hypertension

Chaperoning Against Amyloid Aggregation: Monitoring In Vitro and In Vivo-

ScienceDirect

Characterization and health risk assessment of indoor dust in biomass and LPG based households of rural Telangana, India, Journal of Air and Waste Management Association, 69,1438-145-

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ChassiDex: A microbial database useful for synthetic biology applications-

bioRxiv

Co-Culture of Lactobacillus delbrueckii and Engineered Lactococcus lactis enhances stoichiometric yield of D-Lactic Acid from whey permeate-Processes, 7(6), 343

Applied Microbiology and Biotechnology

Cuprous Oxide or copper coated jute stick pieces at air-water interface for prevention of aerial contamination in potable water ACS OMEGA, 4, 27, 22514-22520 -

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Datasets Describing Hydrogel Properties and Cellular Metrics for Modeling of Tumor Dormancy. Data in Brief 2019, 25: 104128-

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Design and construction of a synthetic riboregulator-based platform for metabolic shunting of pathways in Lactococcus lactis,-

Proceedings of the Singapore National Academy of Science, V.1(1), 1-10

Drug repositioning for dengue hemorrhagic fever by integrating multiple omics analyses.-

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Rational metabolic engineering for enhanced alpha-tocopherol production in Helianthus annuus cell culture

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Statistical analysis of disease-causing and neutral mutations in human membrane proteins-

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Tunable Hydrogels for Controlling Phenotypic Cancer Cell States to Model Breast Cancer Dormancy and Reactivation. Biomaterials 2019, 215:119177-

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Uncovering Novel Pathways for Enhancing Hyaluronan Synthesis in Recombinant Lactococcus lactis

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