Department of Biotechnology | Indian Institute Of Technology Madras , Chennai
faculty member

Anushka Gupta

Assistant Professor

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Ph.D.,  University of California, Berkeley

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B.Tech., M.Tech Dual Degree,  Indian Institute of Technology Kharagpur

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Block 2, BT 322

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044 2257 4139

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agupta[at]iitm[.]ac[.]in

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Block 2, BT 303A

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Lab: 044 2257 4139

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  • Single-cell and spatial multi-omics assay development
  • Bioinformatic methods development for single-cell and spatial multi-omics data analysis
  • Tumor-microenvironmental heterogeneity and their co-evolution during cancer progression
  • Applications of spatial multi-omics in biomedical research

  1. Chen TN, Gupta A, Zalavadia MD, Streets A. (2020). "μCB-seq: microfluidic cell barcoding and sequencing for high-resolution imaging and sequencing of single cells", Lab on a Chip, 20, pp. 3899-3913 .
  2. Gupta A , Dorlhiac GF , Streets AM . (2019). "Quantitative imaging of lipid droplets in single cells", Analyst, 144(3), pp. 753-765 .
  3. Anushka Gupta, Vissarion Efthymiou, Sean D. Kodani, Farnaz Shamsi, Mary Elizabeth Patti, Yu-Hua Tseng, Aaron Streets (2023). "Mapping the transcriptional landscape of human white and brown adipogenesis using single-nuclei RNA-seq", Molecular Metabolism, 74, pp. 2212-8778.
  4. Michelli Faria de Oliveira, Juan Pablo Romero, Meii Chung, Stephen R. Williams, Andrew D. Gottscho, Anushka Gupta, Susan E. Pilipauskas, Seayar Mohabbat, Nandhini Raman, David J. Sukovich, David M. Patterson, Visium HD Development Team & Sarah E. B. Taylor (2025). "High-definition spatial transcriptomic profiling of immune cell populations in colorectal cancer", Nature Genetics , 57, pp. 1512–1523.
  5. Anushka Gupta, Farnaz Shamsi, Nicolas Altemose, Gabriel F. Dorlhiac, Aaron M. Cypess, Andrew P. White, Nir Yosef, Mary Elizabeth Patti, Yu-Hua Tseng, and Aaron Streets (2022). "Characterization of transcript enrichment and detection bias in single-nucleus RNA-seq for mapping of distinct human adipocyte lineages", Genome Research, 32(2), pp. 242-257.